Variant report

Variant	rs73830737
Chromosome Location	chr3:46131863-46131864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46130825..46132979-chr3:46149857..46153032,4	MCF-7	breast:
2	chr3:46129568..46133226-chr3:46150928..46153874,4	MCF-7	breast:
3	chr3:46130909..46132770-chr3:46427115..46429449,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1500006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17078579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41395345	1.00[AMR][1000 genomes]
rs57509359	1.00[AMR][1000 genomes]
rs57857531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58692140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59253523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59862185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60829665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60854606	1.00[AMR][1000 genomes]
rs73830722	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830725	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830733	1.00[AFR][1000 genomes]
rs73830745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830784	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46126200-46132600	Weak transcription	Right Atrium	heart
2	chr3:46127200-46138200	Weak transcription	Primary T cells from cord blood	blood
3	chr3:46129200-46132000	Weak transcription	Dnd41	blood
4	chr3:46129200-46147400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:46129400-46132000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr3:46129400-46154200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:46129800-46134000	Enhancers	Primary B cells from cord blood	blood
8	chr3:46129800-46134200	Enhancers	GM12878-XiMat	blood
9	chr3:46129800-46140000	Enhancers	Fetal Thymus	thymus
10	chr3:46130200-46132200	Enhancers	NHLF	lung
11	chr3:46130200-46132400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:46130200-46132600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:46130200-46132600	Enhancers	Spleen	Spleen
14	chr3:46130200-46141200	Enhancers	Primary B cells from peripheral blood	blood
15	chr3:46130400-46132200	Enhancers	Hela-S3	cervix
16	chr3:46130400-46132200	Enhancers	NHDF-Ad	bronchial
17	chr3:46130400-46132200	Enhancers	NHEK	skin
18	chr3:46130400-46132400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:46130400-46132400	Enhancers	HMEC	breast
20	chr3:46130400-46132600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:46130400-46132600	Enhancers	Adipose Nuclei	Adipose
22	chr3:46130600-46132000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:46130600-46132000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr3:46130600-46132200	Enhancers	Primary T cells fromperipheralblood	blood
25	chr3:46130600-46132200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:46130600-46132200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:46130600-46132200	Enhancers	HSMM	muscle
28	chr3:46130600-46133200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr3:46130600-46133200	Enhancers	Placenta	Placenta
30	chr3:46130600-46143000	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr3:46130800-46135600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:46130800-46135800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:46131000-46132000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:46131000-46132000	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr3:46131000-46132200	Bivalent Enhancer	Fetal Muscle Leg	muscle
36	chr3:46131400-46132200	Enhancers	Osteobl	bone
37	chr3:46131400-46132800	Weak transcription	Gastric	stomach
38	chr3:46131400-46134600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr3:46131400-46137400	Weak transcription	Colonic Mucosa	Colon
40	chr3:46131400-46138000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr3:46131400-46152200	Weak transcription	Pancreas	Pancrea
42	chr3:46131800-46132000	Enhancers	Duodenum Mucosa	Duodenum
43	chr3:46131800-46132600	Enhancers	Brain Anterior Caudate	brain
44	chr3:46131800-46133000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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