Variant report

Variant	rs2201697
Chromosome Location	chr12:42227928-42227929
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10454023	0.93[EUR][1000 genomes]
rs10491996	0.93[EUR][1000 genomes]
rs10748319	0.91[EUR][1000 genomes]
rs11181235	0.85[CEU][hapmap]
rs12578156	0.82[JPT][hapmap]
rs12579046	0.96[ASN][1000 genomes]
rs12581318	0.99[ASN][1000 genomes]
rs12581580	0.89[ASN][1000 genomes]
rs12582190	0.99[ASN][1000 genomes]
rs1391002	0.85[EUR][1000 genomes]
rs1497148	0.91[EUR][1000 genomes]
rs1497160	0.85[ASN][1000 genomes]
rs17576430	0.86[JPT][hapmap]
rs1845976	0.81[EUR][1000 genomes]
rs1966396	0.85[EUR][1000 genomes]
rs2406425	0.85[ASN][1000 genomes]
rs2406451	0.93[EUR][1000 genomes]
rs4604952	0.85[EUR][1000 genomes]
rs4643129	0.85[ASN][1000 genomes]
rs4768374	0.81[EUR][1000 genomes]
rs4768379	0.85[EUR][1000 genomes]
rs59262536	0.85[ASN][1000 genomes]
rs73128112	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
4	nsv1041975	chr12:42159517-42254373	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv1037646	chr12:42160758-42254373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
6	nsv1055012	chr12:42221483-42253502	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv1051707	chr12:42221483-42254373	Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42208800-42231000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:42218600-42257000	Weak transcription	Aorta	Aorta
3	chr12:42227000-42229200	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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