Variant report

Variant	rs2406425
Chromosome Location	chr12:42277150-42277151
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12578119	1.00[EUR][1000 genomes]
rs12578156	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs12578493	1.00[EUR][1000 genomes]
rs12579046	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12579248	1.00[EUR][1000 genomes]
rs12579406	1.00[EUR][1000 genomes]
rs12581318	0.86[ASN][1000 genomes]
rs12581580	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12582190	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12582741	1.00[EUR][1000 genomes]
rs1390999	1.00[EUR][1000 genomes]
rs1497160	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497171	1.00[EUR][1000 genomes]
rs1497172	1.00[EUR][1000 genomes]
rs17090714	1.00[EUR][1000 genomes]
rs17090734	1.00[EUR][1000 genomes]
rs17576374	1.00[EUR][1000 genomes]
rs17576430	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs17576634	1.00[EUR][1000 genomes]
rs17604154	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17604161	1.00[EUR][1000 genomes]
rs17604260	1.00[EUR][1000 genomes]
rs17604358	1.00[EUR][1000 genomes]
rs2201697	0.85[ASN][1000 genomes]
rs34906873	1.00[EUR][1000 genomes]
rs3937913	1.00[EUR][1000 genomes]
rs4643129	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58012900	1.00[EUR][1000 genomes]
rs59262536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61442472	1.00[EUR][1000 genomes]
rs73270680	1.00[EUR][1000 genomes]
rs73276316	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899046	chr12:42271300-42291928	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42274000-42288200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:42275600-42277400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:42277000-42286200	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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