Variant report

Variant	rs17090734
Chromosome Location	chr12:42224300-42224301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12320472	0.98[ASN][1000 genomes]
rs12578119	1.00[EUR][1000 genomes]
rs12578156	1.00[EUR][1000 genomes]
rs12578493	1.00[EUR][1000 genomes]
rs12579046	1.00[EUR][1000 genomes]
rs12579248	1.00[EUR][1000 genomes]
rs12579406	1.00[EUR][1000 genomes]
rs12581580	1.00[EUR][1000 genomes]
rs12582190	1.00[EUR][1000 genomes]
rs12582741	1.00[EUR][1000 genomes]
rs1390999	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1497160	1.00[EUR][1000 genomes]
rs1497170	0.98[ASN][1000 genomes]
rs1497171	1.00[EUR][1000 genomes]
rs1497172	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17090714	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17576374	1.00[EUR][1000 genomes]
rs17576430	1.00[EUR][1000 genomes]
rs17576634	1.00[EUR][1000 genomes]
rs17604154	1.00[EUR][1000 genomes]
rs17604161	1.00[EUR][1000 genomes]
rs17604260	1.00[EUR][1000 genomes]
rs17604358	1.00[EUR][1000 genomes]
rs2406425	1.00[EUR][1000 genomes]
rs34906873	1.00[EUR][1000 genomes]
rs3937913	1.00[EUR][1000 genomes]
rs4643129	1.00[EUR][1000 genomes]
rs58012900	1.00[EUR][1000 genomes]
rs59262536	1.00[EUR][1000 genomes]
rs61442472	1.00[EUR][1000 genomes]
rs73270680	1.00[EUR][1000 genomes]
rs73276316	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
4	nsv1041975	chr12:42159517-42254373	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv1037646	chr12:42160758-42254373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
6	nsv1055012	chr12:42221483-42253502	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv1051707	chr12:42221483-42254373	Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
8	nsv522657	chr12:42224300-42226876	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42208800-42231000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:42218600-42257000	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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