Variant report
| Variant | rs34906873 |
|---|---|
| Chromosome Location | chr12:42278579-42278580 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs12578119 | 1.00[EUR][1000 genomes] |
| rs12578156 | 1.00[EUR][1000 genomes] |
| rs12578493 | 1.00[EUR][1000 genomes] |
| rs12579046 | 1.00[EUR][1000 genomes] |
| rs12579248 | 1.00[EUR][1000 genomes] |
| rs12579406 | 1.00[EUR][1000 genomes] |
| rs12581580 | 1.00[EUR][1000 genomes] |
| rs12582190 | 1.00[EUR][1000 genomes] |
| rs12582741 | 1.00[EUR][1000 genomes] |
| rs1390999 | 1.00[EUR][1000 genomes] |
| rs1497160 | 1.00[EUR][1000 genomes] |
| rs1497171 | 1.00[EUR][1000 genomes] |
| rs1497172 | 1.00[EUR][1000 genomes] |
| rs17090714 | 1.00[EUR][1000 genomes] |
| rs17090734 | 1.00[EUR][1000 genomes] |
| rs17576374 | 1.00[EUR][1000 genomes] |
| rs17576430 | 1.00[EUR][1000 genomes] |
| rs17576634 | 1.00[EUR][1000 genomes] |
| rs17604154 | 1.00[EUR][1000 genomes] |
| rs17604161 | 1.00[EUR][1000 genomes] |
| rs17604260 | 1.00[EUR][1000 genomes] |
| rs17604358 | 1.00[EUR][1000 genomes] |
| rs2406425 | 1.00[EUR][1000 genomes] |
| rs3937913 | 1.00[EUR][1000 genomes] |
| rs4643129 | 1.00[EUR][1000 genomes] |
| rs58012900 | 1.00[EUR][1000 genomes] |
| rs59262536 | 1.00[EUR][1000 genomes] |
| rs61442472 | 1.00[EUR][1000 genomes] |
| rs73270680 | 1.00[EUR][1000 genomes] |
| rs73276316 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899043 | chr12:42058138-42313665 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv899044 | chr12:42058138-42321161 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv899046 | chr12:42271300-42291928 | Weak transcription ZNF genes & repeats Enhancers Active TSS | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42274000-42288200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 2 | chr12:42277000-42286200 | Weak transcription | Primary hematopoietic stem cells | blood |
