Variant report

Variant	rs3937913
Chromosome Location	chr12:42160364-42160365
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12578119	1.00[EUR][1000 genomes]
rs12578156	1.00[EUR][1000 genomes]
rs12578493	1.00[EUR][1000 genomes]
rs12579046	1.00[EUR][1000 genomes]
rs12579248	1.00[EUR][1000 genomes]
rs12579406	1.00[EUR][1000 genomes]
rs12581580	1.00[EUR][1000 genomes]
rs12582190	1.00[EUR][1000 genomes]
rs12582741	1.00[EUR][1000 genomes]
rs1390999	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1497160	1.00[EUR][1000 genomes]
rs1497170	0.81[ASN][1000 genomes]
rs1497171	1.00[EUR][1000 genomes]
rs1497172	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17090714	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17090734	1.00[EUR][1000 genomes]
rs17129723	0.81[ASN][1000 genomes]
rs17576374	1.00[EUR][1000 genomes]
rs17576430	1.00[EUR][1000 genomes]
rs17604154	1.00[EUR][1000 genomes]
rs17604161	1.00[EUR][1000 genomes]
rs17604260	1.00[EUR][1000 genomes]
rs17604358	1.00[EUR][1000 genomes]
rs2406425	1.00[EUR][1000 genomes]
rs34906873	1.00[EUR][1000 genomes]
rs4643129	1.00[EUR][1000 genomes]
rs58012900	1.00[EUR][1000 genomes]
rs59262536	1.00[EUR][1000 genomes]
rs61442472	1.00[EUR][1000 genomes]
rs73270680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276316	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv899045	chr12:42118062-42174431	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv975412	chr12:42158676-42161689	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
8	nsv1041975	chr12:42159517-42254373	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42158600-42165600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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