Variant report
| Variant | rs61442472 |
|---|---|
| Chromosome Location | chr12:42218129-42218130 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs12309695 | 0.94[ASN][1000 genomes] |
| rs12315514 | 0.96[ASN][1000 genomes] |
| rs12578119 | 1.00[EUR][1000 genomes] |
| rs12578156 | 1.00[EUR][1000 genomes] |
| rs12578493 | 1.00[EUR][1000 genomes] |
| rs12579046 | 1.00[EUR][1000 genomes] |
| rs12579248 | 1.00[EUR][1000 genomes] |
| rs12579406 | 1.00[EUR][1000 genomes] |
| rs12581580 | 1.00[EUR][1000 genomes] |
| rs12582190 | 1.00[EUR][1000 genomes] |
| rs12582741 | 1.00[EUR][1000 genomes] |
| rs1390999 | 1.00[EUR][1000 genomes] |
| rs1497159 | 0.83[ASN][1000 genomes] |
| rs1497160 | 1.00[EUR][1000 genomes] |
| rs1497171 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1497172 | 1.00[EUR][1000 genomes] |
| rs17090714 | 1.00[EUR][1000 genomes] |
| rs17090734 | 1.00[EUR][1000 genomes] |
| rs17576374 | 1.00[EUR][1000 genomes] |
| rs17576430 | 1.00[EUR][1000 genomes] |
| rs17576634 | 1.00[EUR][1000 genomes] |
| rs17604154 | 1.00[EUR][1000 genomes] |
| rs17604161 | 1.00[EUR][1000 genomes] |
| rs17604260 | 1.00[EUR][1000 genomes] |
| rs17604358 | 1.00[EUR][1000 genomes] |
| rs2406425 | 1.00[EUR][1000 genomes] |
| rs34906873 | 1.00[EUR][1000 genomes] |
| rs3937913 | 1.00[EUR][1000 genomes] |
| rs4643129 | 1.00[EUR][1000 genomes] |
| rs58012900 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs58568237 | 0.80[ASN][1000 genomes] |
| rs59262536 | 1.00[EUR][1000 genomes] |
| rs61109594 | 0.93[ASN][1000 genomes] |
| rs73270680 | 1.00[EUR][1000 genomes] |
| rs73276316 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899043 | chr12:42058138-42313665 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv899044 | chr12:42058138-42321161 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1047870 | chr12:42158954-42254373 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer | lncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1041975 | chr12:42159517-42254373 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv1037646 | chr12:42160758-42254373 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42208800-42231000 | Weak transcription | Primary hematopoietic stem cells | blood |
