Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1046864	0.91[CEU][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs11033623	0.84[CEU][hapmap]
rs11600757	0.82[CEU][hapmap]
rs11604180	0.91[ASN][1000 genomes]
rs12281565	0.84[CEU][hapmap]
rs12294785	0.91[CEU][hapmap]
rs2303439	0.91[CEU][hapmap]
rs331457	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs4755453	0.91[CEU][hapmap]
rs5030403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030437	0.91[CEU][hapmap]
rs5030445	0.91[CEU][hapmap]
rs5030470	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs5030472	0.82[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs5030482	0.91[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs5030485	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs540386	0.91[CEU][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs552140	0.91[CEU][hapmap]
rs7111402	0.85[TSI][hapmap]
rs7117947	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7127484	0.84[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs7479562	0.91[ASN][1000 genomes]
rs890258	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2201845	LDLRAD3	cis	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36555600-36556400	Enhancers	Primary neutrophils fromperipheralblood	blood

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