Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36530765..36533204-chr11:36534006..36537074,3	K562	blood:
2	chr11:36530329..36533204-chr11:36533479..36537074,4	K562	blood:

Variant related genes	Relation type
ENSG00000175104	Chromatin interaction
ENSG00000166349	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1046864	0.90[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11033623	0.81[CEU][hapmap]
rs11604180	0.91[ASN][1000 genomes]
rs12281565	0.81[CEU][hapmap]
rs12294785	0.81[CEU][hapmap]
rs2201845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303439	0.91[CEU][hapmap]
rs331457	0.91[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4755453	0.91[CEU][hapmap]
rs502243	0.81[EUR][1000 genomes]
rs5030409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030437	0.90[CEU][hapmap]
rs5030445	0.90[CEU][hapmap]
rs5030470	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5030472	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs5030482	0.90[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs5030485	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs540386	0.90[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs552140	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs7117947	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7127484	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs7479562	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36532600-36534600	Enhancers	Fetal Intestine Large	intestine
2	chr11:36532600-36534800	Enhancers	Fetal Intestine Small	intestine
3	chr11:36532600-36535400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:36534000-36535200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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