Variant report

Variant	rs2207125
Chromosome Location	chr20:11363456-11363457
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2207127	0.89[AFR][1000 genomes]
rs2207128	0.89[AFR][1000 genomes]
rs6074296	0.80[AFR][1000 genomes]
rs6078154	0.89[AFR][1000 genomes]
rs6078155	0.89[AFR][1000 genomes]
rs6078156	0.86[AFR][1000 genomes]
rs6078158	0.80[AFR][1000 genomes]
rs6104744	0.89[AFR][1000 genomes]
rs6104746	0.87[AFR][1000 genomes]
rs6108947	0.88[AFR][1000 genomes]
rs6108949	0.88[AFR][1000 genomes]
rs6108950	0.88[AFR][1000 genomes]
rs6134231	0.89[AFR][1000 genomes]
rs6134235	0.80[AFR][1000 genomes]
rs7269125	0.80[AFR][1000 genomes]
rs764355	0.80[AFR][1000 genomes]
rs8119692	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11363400-11367600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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