Variant report

Variant	rs6104744
Chromosome Location	chr20:11360772-11360773
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10432740	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11087024	0.81[AFR][1000 genomes]
rs2207125	0.89[AFR][1000 genomes]
rs2207127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327372	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2327373	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2327374	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2327375	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2327376	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2327400	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2876223	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35455280	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4522681	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6033101	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6033103	0.80[EUR][1000 genomes]
rs6033104	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6033109	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6040526	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6040529	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6040530	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6040531	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6040533	0.90[EUR][1000 genomes]
rs6074280	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6074286	0.80[EUR][1000 genomes]
rs6074296	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6078128	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6078129	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6078153	0.81[EUR][1000 genomes]
rs6078154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6078155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6078156	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6078158	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6078160	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6104746	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6108946	0.81[EUR][1000 genomes]
rs6108947	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6108949	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6108950	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6134231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6134235	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7269125	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs764354	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs764355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8119692	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11358600-11361000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:11358600-11361200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr20:11359200-11361600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:11359800-11361000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:11359800-11361000	Enhancers	Esophagus	oesophagus
6	chr20:11360000-11360800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:11360000-11360800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr20:11360000-11360800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr20:11360000-11360800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr20:11360000-11360800	Enhancers	Fetal Muscle Trunk	muscle
11	chr20:11360000-11360800	Enhancers	Fetal Muscle Leg	muscle
12	chr20:11360000-11361000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr20:11360000-11361000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr20:11360000-11361000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr20:11360000-11361000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr20:11360000-11361000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr20:11360000-11361000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr20:11360000-11361000	Enhancers	Placenta	Placenta
19	chr20:11360000-11361200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr20:11360000-11361800	Enhancers	GM12878-XiMat	blood
21	chr20:11360200-11360800	Enhancers	Osteobl	bone
22	chr20:11360200-11361000	Enhancers	H9 Cell Line	embryonic stem cell
23	chr20:11360200-11361200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr20:11360400-11360800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr20:11360400-11360800	Enhancers	Fetal Intestine Large	intestine
26	chr20:11360400-11360800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr20:11360400-11361000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr20:11360400-11361200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr20:11360600-11361000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr20:11360600-11361000	Enhancers	Fetal Thymus	thymus
31	chr20:11360600-11361200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr20:11360600-11361400	Enhancers	HUES48 Cell Line	embryonic stem cell

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