Variant report

Variant	rs2327400
Chromosome Location	chr20:11339706-11339707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10432740	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2207127	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2207128	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2327372	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2327373	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2327374	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2327375	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2327376	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2876223	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35455280	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4522681	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6033101	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6033103	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6033104	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6033109	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6040526	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6040529	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6040530	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6040531	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6040533	0.95[EUR][1000 genomes]
rs6074280	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6074296	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6078128	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6078129	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6078154	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6078155	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6078156	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6078158	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6078160	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6104744	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6104746	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6108947	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6108949	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6108950	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6134231	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6134235	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7269125	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs764354	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs764355	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8119692	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11335000-11355400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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