Variant report
| Variant | rs6078153 |
|---|---|
| Chromosome Location | chr20:11363933-11363934 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:11330194..11333067-chr20:11363546..11365974,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs1119133 | 0.91[EUR][1000 genomes] |
| rs13036847 | 0.92[AFR][1000 genomes] |
| rs2024623 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2207127 | 0.81[EUR][1000 genomes] |
| rs2207128 | 0.81[EUR][1000 genomes] |
| rs4239706 | 0.91[EUR][1000 genomes] |
| rs4813984 | 0.88[EUR][1000 genomes] |
| rs6033099 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6033100 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6040601 | 0.97[AFR][1000 genomes] |
| rs6074286 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6074296 | 0.81[EUR][1000 genomes] |
| rs6078124 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6078154 | 0.81[EUR][1000 genomes] |
| rs6078155 | 0.81[EUR][1000 genomes] |
| rs6078156 | 0.81[EUR][1000 genomes] |
| rs6078158 | 0.81[EUR][1000 genomes] |
| rs6078160 | 0.81[EUR][1000 genomes] |
| rs6104744 | 0.81[EUR][1000 genomes] |
| rs6104746 | 0.81[EUR][1000 genomes] |
| rs6108913 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6108946 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6108947 | 0.80[EUR][1000 genomes] |
| rs6108949 | 0.81[EUR][1000 genomes] |
| rs6108950 | 0.81[EUR][1000 genomes] |
| rs6134235 | 0.81[EUR][1000 genomes] |
| rs7269125 | 0.81[EUR][1000 genomes] |
| rs764354 | 0.81[EUR][1000 genomes] |
| rs764355 | 0.81[EUR][1000 genomes] |
| rs766228 | 0.85[AFR][1000 genomes] |
| rs8119692 | 0.81[EUR][1000 genomes] |
| rs910260 | 0.97[AFR][1000 genomes] |
| rs982210 | 0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs991417 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1065969 | chr20:10850562-11464172 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv544181 | chr20:10850562-11464172 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv585415 | chr20:11134907-11383327 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:11363400-11367600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
