Variant report

Variant	rs910260
Chromosome Location	chr20:11369714-11369715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13036847	0.89[AFR][1000 genomes]
rs2207123	0.81[AFR][1000 genomes]
rs6040601	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6078153	0.97[AFR][1000 genomes]
rs6108946	0.92[AFR][1000 genomes]
rs766228	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11367600-11370600	Enhancers	HMEC	breast
2	chr20:11369000-11371800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr20:11369200-11370600	Enhancers	NHEK	skin
4	chr20:11369400-11370400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:11369400-11370400	Enhancers	Hela-S3	cervix
6	chr20:11369600-11370000	Enhancers	NH-A	brain
7	chr20:11369600-11370200	Enhancers	A549	lung
8	chr20:11369600-11370400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr20:11369600-11370600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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