Variant report

Variant	rs13036847
Chromosome Location	chr20:11363950-11363951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2092644	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143873	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2207123	0.85[AFR][1000 genomes]
rs2327378	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4514945	0.85[EUR][1000 genomes]
rs6040551	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6040599	0.82[AFR][1000 genomes]
rs6040601	0.89[AFR][1000 genomes]
rs6074286	0.81[AFR][1000 genomes]
rs6078153	0.92[AFR][1000 genomes]
rs6108937	0.88[EUR][1000 genomes]
rs6108946	0.89[AFR][1000 genomes]
rs761477	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910260	0.89[AFR][1000 genomes]
rs988375	0.80[AFR][1000 genomes]
rs989854	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11363400-11367600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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