Variant report

Variant	rs2207123
Chromosome Location	chr20:11368757-11368758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13036847	0.85[AFR][1000 genomes]
rs2327409	1.00[EUR][1000 genomes]
rs6033122	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6040574	0.82[AFR][1000 genomes]
rs6040580	1.00[EUR][1000 genomes]
rs6040590	1.00[EUR][1000 genomes]
rs6040595	1.00[EUR][1000 genomes]
rs6040599	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6040601	0.81[AFR][1000 genomes]
rs6040602	1.00[EUR][1000 genomes]
rs6040606	1.00[EUR][1000 genomes]
rs6040607	1.00[EUR][1000 genomes]
rs60870129	1.00[EUR][1000 genomes]
rs6108930	1.00[EUR][1000 genomes]
rs7345151	1.00[EUR][1000 genomes]
rs761476	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs910260	0.81[AFR][1000 genomes]
rs988375	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11367200-11369200	Enhancers	A549	lung
2	chr20:11367400-11368800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr20:11367400-11369000	Enhancers	Hela-S3	cervix
4	chr20:11367600-11368800	Enhancers	NHEK	skin
5	chr20:11367600-11369000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr20:11367600-11370600	Enhancers	HMEC	breast
7	chr20:11367800-11368800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr20:11368000-11369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr20:11368400-11369200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr20:11368400-11369400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr20:11368400-11369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr20:11368600-11369600	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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