Variant report

Variant	rs7345151
Chromosome Location	chr20:11350292-11350293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11905486	1.00[ASN][1000 genomes]
rs11906214	0.95[ASN][1000 genomes]
rs11907452	1.00[ASN][1000 genomes]
rs11908191	0.81[ASN][1000 genomes]
rs12480182	1.00[ASN][1000 genomes]
rs12480424	0.95[ASN][1000 genomes]
rs12480631	0.95[ASN][1000 genomes]
rs12481555	1.00[ASN][1000 genomes]
rs2207123	1.00[EUR][1000 genomes]
rs2327409	1.00[EUR][1000 genomes]
rs57261719	1.00[ASN][1000 genomes]
rs59917750	0.95[ASN][1000 genomes]
rs6033111	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6033122	1.00[EUR][1000 genomes]
rs6040580	1.00[EUR][1000 genomes]
rs6040590	1.00[EUR][1000 genomes]
rs6040595	1.00[EUR][1000 genomes]
rs6040599	1.00[EUR][1000 genomes]
rs6040602	1.00[EUR][1000 genomes]
rs6040606	1.00[EUR][1000 genomes]
rs6040607	1.00[EUR][1000 genomes]
rs6074269	0.81[ASN][1000 genomes]
rs6074270	0.81[ASN][1000 genomes]
rs60870129	1.00[EUR][1000 genomes]
rs6108930	1.00[EUR][1000 genomes]
rs73243912	1.00[ASN][1000 genomes]
rs73243938	1.00[ASN][1000 genomes]
rs73261510	0.95[ASN][1000 genomes]
rs73261514	0.95[ASN][1000 genomes]
rs73261517	1.00[ASN][1000 genomes]
rs73261522	1.00[ASN][1000 genomes]
rs73261550	1.00[ASN][1000 genomes]
rs761476	1.00[EUR][1000 genomes]
rs8118110	1.00[ASN][1000 genomes]
rs988375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3409706	chr20:11347552-11352350	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3388930	chr20:11348452-11351550	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3376008	chr20:11348452-11351650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3432469	chr20:11348552-11351550	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11335000-11355400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11345400-11360000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:11346600-11358600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr20:11346800-11360000	Weak transcription	Psoas Muscle	Psoas
5	chr20:11347800-11356000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr20:11348000-11354400	Weak transcription	HMEC	breast
7	chr20:11349400-11350400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr20:11349600-11350400	ZNF genes & repeats	Aorta	Aorta
9	chr20:11349600-11350400	ZNF genes & repeats	Fetal Kidney	kidney
10	chr20:11349600-11350400	Enhancers	Gastric	stomach
11	chr20:11349600-11350400	Enhancers	Pancreas	Pancrea
12	chr20:11349600-11350600	ZNF genes & repeats	Fetal Brain Male	brain
13	chr20:11349600-11352000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr20:11349800-11350400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr20:11349800-11353200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr20:11350000-11353800	Weak transcription	Right Atrium	heart
17	chr20:11350200-11350400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr20:11350200-11350400	Enhancers	Esophagus	oesophagus
19	chr20:11350200-11350400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
20	chr20:11350200-11350600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast

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