Variant report
| Variant | rs73261517 |
|---|---|
| Chromosome Location | chr20:11292004-11292005 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11905486 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11906214 | 0.95[ASN][1000 genomes] |
| rs11907452 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11908191 | 0.81[ASN][1000 genomes] |
| rs12480182 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12480424 | 0.90[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12480631 | 0.91[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12481555 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57261719 | 0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59917750 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6033111 | 1.00[ASN][1000 genomes] |
| rs6074269 | 0.81[ASN][1000 genomes] |
| rs6074270 | 0.81[ASN][1000 genomes] |
| rs73243912 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73243938 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73261510 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73261514 | 0.83[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73261522 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73261550 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7345151 | 1.00[ASN][1000 genomes] |
| rs8118110 | 0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1065969 | chr20:10850562-11464172 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv544181 | chr20:10850562-11464172 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv585415 | chr20:11134907-11383327 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv458869 | chr20:11271614-11306751 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv585417 | chr20:11271614-11306751 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:11287000-11298600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
