Variant report
| Variant | rs6108930 |
|---|---|
| Chromosome Location | chr20:11339610-11339611 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs2207123 | 1.00[EUR][1000 genomes] |
| rs2327409 | 1.00[EUR][1000 genomes] |
| rs6033122 | 0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6040536 | 0.82[AFR][1000 genomes] |
| rs6040548 | 0.84[AFR][1000 genomes] |
| rs6040559 | 0.83[AFR][1000 genomes] |
| rs6040564 | 0.86[AFR][1000 genomes] |
| rs6040570 | 0.86[AFR][1000 genomes] |
| rs6040574 | 0.90[AFR][1000 genomes] |
| rs6040580 | 1.00[EUR][1000 genomes] |
| rs6040590 | 1.00[EUR][1000 genomes] |
| rs6040595 | 1.00[EUR][1000 genomes] |
| rs6040599 | 1.00[EUR][1000 genomes] |
| rs6040602 | 1.00[EUR][1000 genomes] |
| rs6040606 | 1.00[EUR][1000 genomes] |
| rs6040607 | 1.00[EUR][1000 genomes] |
| rs60870129 | 1.00[EUR][1000 genomes] |
| rs6108924 | 0.86[AFR][1000 genomes] |
| rs7273061 | 0.83[AFR][1000 genomes] |
| rs7345151 | 1.00[EUR][1000 genomes] |
| rs761476 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs988375 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1065969 | chr20:10850562-11464172 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv544181 | chr20:10850562-11464172 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv585415 | chr20:11134907-11383327 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:11335000-11355400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
