Variant report

Variant	rs761477
Chromosome Location	chr20:11353414-11353415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13036847	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2092644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143873	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2179831	0.81[EUR][1000 genomes]
rs2179832	0.81[EUR][1000 genomes]
rs2327378	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4514945	0.90[EUR][1000 genomes]
rs4813993	0.81[EUR][1000 genomes]
rs6033131	0.81[EUR][1000 genomes]
rs6033132	0.81[EUR][1000 genomes]
rs6040551	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6040627	0.81[EUR][1000 genomes]
rs6040628	0.81[EUR][1000 genomes]
rs6040643	0.81[EUR][1000 genomes]
rs6108937	0.92[EUR][1000 genomes]
rs941469	0.81[EUR][1000 genomes]
rs989854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11335000-11355400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11345400-11360000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:11346600-11358600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr20:11346800-11360000	Weak transcription	Psoas Muscle	Psoas
5	chr20:11347800-11356000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr20:11348000-11354400	Weak transcription	HMEC	breast
7	chr20:11350000-11353800	Weak transcription	Right Atrium	heart
8	chr20:11350400-11353800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:11350400-11353800	Weak transcription	Esophagus	oesophagus
10	chr20:11350400-11356600	Weak transcription	Fetal Kidney	kidney
11	chr20:11350400-11360200	Weak transcription	Pancreas	Pancrea
12	chr20:11350600-11353600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr20:11351200-11358600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr20:11352000-11355200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr20:11352000-11358800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr20:11352800-11358600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr20:11353000-11354600	Enhancers	Fetal Muscle Leg	muscle
18	chr20:11353200-11353600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr20:11353200-11353600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr20:11353200-11353800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr20:11353200-11354400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr20:11353200-11354600	Enhancers	Brain Germinal Matrix	brain
23	chr20:11353200-11354800	Enhancers	Fetal Brain Male	brain
24	chr20:11353400-11353800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr20:11353400-11354000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr20:11353400-11354000	Enhancers	Placenta Amnion	Placenta Amnion
27	chr20:11353400-11354400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr20:11353400-11354400	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr20:11353400-11354400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr20:11353400-11354600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr20:11353400-11354600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr20:11353400-11354600	Enhancers	HSMMtube	muscle

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