Variant report

Variant	rs4514945
Chromosome Location	chr20:11333562-11333563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13036847	0.85[EUR][1000 genomes]
rs2092644	0.90[EUR][1000 genomes]
rs2143873	0.85[EUR][1000 genomes]
rs2179831	0.85[EUR][1000 genomes]
rs2179832	0.85[EUR][1000 genomes]
rs2327378	0.88[EUR][1000 genomes]
rs4813993	0.84[EUR][1000 genomes]
rs6033131	0.84[EUR][1000 genomes]
rs6033132	0.85[EUR][1000 genomes]
rs6040551	0.88[EUR][1000 genomes]
rs6040627	0.85[EUR][1000 genomes]
rs6040628	0.85[EUR][1000 genomes]
rs6040643	0.84[EUR][1000 genomes]
rs6108937	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs761477	0.90[EUR][1000 genomes]
rs941469	0.84[EUR][1000 genomes]
rs989854	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11330600-11334400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr20:11330800-11333600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr20:11330800-11334200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr20:11330800-11336200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:11331000-11338400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr20:11331200-11333800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr20:11332200-11334200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:11332400-11334200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr20:11332400-11334800	Weak transcription	HMEC	breast
10	chr20:11332400-11336200	Weak transcription	Psoas Muscle	Psoas
11	chr20:11332400-11337400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr20:11332600-11333800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr20:11333000-11333600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr20:11333000-11333600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr20:11333000-11334200	Enhancers	Fetal Lung	lung
16	chr20:11333000-11335800	Weak transcription	Brain Germinal Matrix	brain
17	chr20:11333400-11334400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr20:11333400-11334400	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links