Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2092644	0.81[EUR][1000 genomes]
rs2179831	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179832	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327410	0.86[AFR][1000 genomes]
rs2327411	0.92[AFR][1000 genomes]
rs4514945	0.85[EUR][1000 genomes]
rs4813993	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6033131	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6033132	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040612	0.92[AFR][1000 genomes]
rs6040616	0.94[AFR][1000 genomes]
rs6040617	0.82[AFR][1000 genomes]
rs6040627	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040632	0.80[EUR][1000 genomes]
rs6040643	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6108937	0.88[EUR][1000 genomes]
rs720794	0.92[AFR][1000 genomes]
rs761477	0.81[EUR][1000 genomes]
rs941469	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs989854	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1061567	chr20:11379484-11405302	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11380000-11394200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11380600-11384600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr20:11383200-11384600	Weak transcription	NHEK	skin
4	chr20:11383400-11384400	Weak transcription	Ovary	ovary
5	chr20:11383400-11385000	Enhancers	Colon Smooth Muscle	Colon
6	chr20:11383600-11385400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr20:11383800-11385000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr20:11383800-11385000	Enhancers	Osteobl	bone
9	chr20:11383800-11385200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr20:11383800-11385200	Enhancers	Rectal Smooth Muscle	rectum

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