Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1119133	0.91[EUR][1000 genomes]
rs13036847	0.89[AFR][1000 genomes]
rs2024623	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2207127	0.81[EUR][1000 genomes]
rs2207128	0.81[EUR][1000 genomes]
rs4239706	0.91[EUR][1000 genomes]
rs4813984	0.88[EUR][1000 genomes]
rs6033099	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6033100	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6040601	0.92[AFR][1000 genomes]
rs6074286	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6074296	0.81[EUR][1000 genomes]
rs6078124	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6078153	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6078154	0.81[EUR][1000 genomes]
rs6078155	0.81[EUR][1000 genomes]
rs6078156	0.81[EUR][1000 genomes]
rs6078158	0.81[EUR][1000 genomes]
rs6078160	0.81[EUR][1000 genomes]
rs6104744	0.81[EUR][1000 genomes]
rs6104746	0.81[EUR][1000 genomes]
rs6108913	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6108947	0.80[EUR][1000 genomes]
rs6108949	0.81[EUR][1000 genomes]
rs6108950	0.81[EUR][1000 genomes]
rs6134235	0.81[EUR][1000 genomes]
rs7269125	0.81[EUR][1000 genomes]
rs764354	0.81[EUR][1000 genomes]
rs764355	0.81[EUR][1000 genomes]
rs766228	0.80[AFR][1000 genomes]
rs8119692	0.81[EUR][1000 genomes]
rs910260	0.92[AFR][1000 genomes]
rs982210	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs991417	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11361600-11363400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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