Variant report
| Variant | rs4813984 |
|---|---|
| Chromosome Location | chr20:11293617-11293618 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10432740 | 0.82[ASN][1000 genomes] |
| rs1119133 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2024623 | 0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2207104 | 0.80[EUR][1000 genomes] |
| rs2327372 | 0.82[ASN][1000 genomes] |
| rs2327373 | 0.82[ASN][1000 genomes] |
| rs2327374 | 0.81[ASN][1000 genomes] |
| rs2327375 | 0.81[ASN][1000 genomes] |
| rs2327376 | 0.81[ASN][1000 genomes] |
| rs2876223 | 0.82[ASN][1000 genomes] |
| rs35455280 | 0.82[ASN][1000 genomes] |
| rs4239706 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4522681 | 0.82[ASN][1000 genomes] |
| rs6033099 | 0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6033100 | 0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6033101 | 0.82[ASN][1000 genomes] |
| rs6033104 | 0.82[ASN][1000 genomes] |
| rs6033109 | 0.82[ASN][1000 genomes] |
| rs6040526 | 0.82[ASN][1000 genomes] |
| rs6040529 | 0.82[ASN][1000 genomes] |
| rs6040530 | 0.82[ASN][1000 genomes] |
| rs6040531 | 0.82[ASN][1000 genomes] |
| rs6074280 | 0.82[ASN][1000 genomes] |
| rs6074286 | 0.89[EUR][1000 genomes] |
| rs6078124 | 0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6078128 | 0.81[ASN][1000 genomes] |
| rs6078129 | 0.81[ASN][1000 genomes] |
| rs6078153 | 0.88[EUR][1000 genomes] |
| rs6108913 | 0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6108946 | 0.88[EUR][1000 genomes] |
| rs982210 | 0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs991417 | 0.99[EUR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1065969 | chr20:10850562-11464172 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv544181 | chr20:10850562-11464172 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv585415 | chr20:11134907-11383327 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv458869 | chr20:11271614-11306751 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv585417 | chr20:11271614-11306751 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:11287000-11298600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
