Variant report

Variant	rs220826
Chromosome Location	chr6:165846887-165846888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs220815	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs220818	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs221736	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs221737	0.85[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs221738	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs221744	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs221747	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs221748	0.81[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs221750	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs221751	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs454165	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9365885	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv830863	chr6:165803464-165970091	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886929	chr6:165821402-165850480	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886930	chr6:165823608-165850480	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv464136	chr6:165837800-165862892	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv605252	chr6:165837800-165862892	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165747600-165853000	Weak transcription	A549	lung
2	chr6:165788000-165856800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:165806400-165862000	Weak transcription	Right Ventricle	heart
4	chr6:165814200-165853800	Weak transcription	Fetal Lung	lung
5	chr6:165816800-165850600	Weak transcription	Aorta	Aorta
6	chr6:165818400-165848000	Weak transcription	Spleen	Spleen
7	chr6:165818800-165847200	Weak transcription	Fetal Heart	heart
8	chr6:165825600-165856200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:165826600-165856000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:165831000-165862800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:165832200-165856800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:165832200-165856800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:165832200-165858800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:165835200-165849200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:165836000-165848200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:165836000-165873200	Weak transcription	Fetal Brain Male	brain
17	chr6:165839800-165856000	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:165840800-165850000	Weak transcription	Fetal Brain Female	brain
19	chr6:165840800-165853600	Weak transcription	Fetal Kidney	kidney
20	chr6:165841000-165848200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:165841000-165849000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:165841000-165852200	Weak transcription	HSMMtube	muscle
23	chr6:165841000-165853600	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:165841000-165857000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:165841200-165857200	Weak transcription	Left Ventricle	heart
26	chr6:165843000-165847800	Weak transcription	Brain Germinal Matrix	brain
27	chr6:165844000-165856800	Weak transcription	Fetal Stomach	stomach
28	chr6:165845200-165848800	Weak transcription	Colon Smooth Muscle	Colon
29	chr6:165845400-165849400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:165845600-165848600	Strong transcription	Hela-S3	cervix
31	chr6:165846000-165856800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:165846200-165847000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr6:165846600-165848600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:165846600-165850000	Weak transcription	Placenta	Placenta
35	chr6:165846800-165848000	Weak transcription	HSMM	muscle

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