Variant report

Variant	rs454165
Chromosome Location	chr6:165852979-165852980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs220815	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220826	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs221736	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs221737	0.90[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs221738	0.90[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs221744	0.82[ASW][hapmap];0.90[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs221747	0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs221748	0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs221750	0.90[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs221751	0.90[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9365885	0.83[ASW][hapmap];0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830863	chr6:165803464-165970091	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv464136	chr6:165837800-165862892	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv605252	chr6:165837800-165862892	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165747600-165853000	Weak transcription	A549	lung
2	chr6:165788000-165856800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:165806400-165862000	Weak transcription	Right Ventricle	heart
4	chr6:165814200-165853800	Weak transcription	Fetal Lung	lung
5	chr6:165825600-165856200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:165826600-165856000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:165831000-165862800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:165832200-165856800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:165832200-165856800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:165832200-165858800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:165836000-165873200	Weak transcription	Fetal Brain Male	brain
12	chr6:165839800-165856000	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:165840800-165853600	Weak transcription	Fetal Kidney	kidney
14	chr6:165841000-165853600	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:165841000-165857000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:165841200-165857200	Weak transcription	Left Ventricle	heart
17	chr6:165844000-165856800	Weak transcription	Fetal Stomach	stomach
18	chr6:165846000-165856800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:165847400-165854200	Weak transcription	Brain Anterior Caudate	brain
20	chr6:165848400-165853600	Weak transcription	HSMM	muscle
21	chr6:165848400-165856000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:165848400-165856800	Weak transcription	Brain Germinal Matrix	brain
23	chr6:165848600-165853600	Weak transcription	Hela-S3	cervix
24	chr6:165849000-165856000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:165849400-165856200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:165852400-165855800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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