Variant report

Variant	rs2209250
Chromosome Location	chr6:13870683-13870684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10949008	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12207817	0.92[EUR][1000 genomes]
rs12529958	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13201631	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35139352	0.92[EUR][1000 genomes]
rs4712134	0.95[EUR][1000 genomes]
rs62385894	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6919722	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475717	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9475727	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13864400-13872600	Weak transcription	Placenta	Placenta
2	chr6:13865600-13873200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:13867200-13872600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:13867200-13872600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:13868400-13873400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:13869800-13871600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:13870000-13870800	Weak transcription	Fetal Brain Male	brain
8	chr6:13870400-13870800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:13870400-13871200	Enhancers	Adipose Nuclei	Adipose
10	chr6:13870400-13871400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:13870600-13870800	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:13870600-13870800	Enhancers	Brain Angular Gyrus	brain
13	chr6:13870600-13870800	Enhancers	Fetal Lung	lung
14	chr6:13870600-13871000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:13870600-13871000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:13870600-13871000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:13870600-13871000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:13870600-13871400	Enhancers	Brain Cingulate Gyrus	brain
19	chr6:13870600-13871400	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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