Variant report

Variant	rs62385894
Chromosome Location	chr6:13883082-13883083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10949008	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12207817	0.84[EUR][1000 genomes]
rs12529958	0.84[EUR][1000 genomes]
rs13201631	0.86[EUR][1000 genomes]
rs2209250	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35139352	0.84[EUR][1000 genomes]
rs4712134	0.86[EUR][1000 genomes]
rs6919722	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9475717	0.84[EUR][1000 genomes]
rs9475727	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3420238	chr6:13880473-13885771	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3400999	chr6:13881864-13884220	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3379567	chr6:13882226-13884187	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3473819	chr6:13882414-13883965	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3352061	chr6:13882450-13883941	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3473817	chr6:13882474-13883924	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv511850	chr6:13882512-13884124	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3473820	chr6:13882536-13883857	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3490049	chr6:13882546-13883858	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3473821	chr6:13882550-13883856	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3490050	chr6:13882550-13883856	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13882400-13884600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:13882600-13885000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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