Variant report

Variant	rs220986
Chromosome Location	chr20:22968352-22968353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1211376	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1360405	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1360406	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1360407	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1360409	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1431678	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2258208	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2424498	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2424499	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2424500	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2424501	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4815170	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58357425	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61056253	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22968000-22970000	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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