Variant report

Variant	rs58357425
Chromosome Location	chr20:22976434-22976435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1211376	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1360405	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1360406	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1360407	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1360409	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1431678	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs220986	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2258208	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424498	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2424499	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2424500	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2424501	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2424502	0.94[ASN][1000 genomes]
rs4815170	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61056253	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6106592	0.94[ASN][1000 genomes]
rs73608985	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22976400-22976800	Bivalent Enhancer	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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