Variant report

Variant	rs2215132
Chromosome Location	chr14:72475789-72475790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1009017	0.86[CEU][hapmap]
rs11623376	0.82[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11623535	0.91[CEU][hapmap]
rs12586947	0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12586968	0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12883063	0.91[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12884202	0.82[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12884483	0.85[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12885938	0.83[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12892100	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12897386	0.91[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2190867	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2238268	0.82[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2238269	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2238270	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2238280	0.82[CEU][hapmap]
rs2239267	0.82[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2239268	0.83[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2332707	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35727014	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4048388	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4243640	0.91[CEU][hapmap]
rs4350510	0.91[CEU][hapmap]
rs4354860	0.91[CEU][hapmap]
rs4899412	0.82[CEU][hapmap]
rs4902966	0.91[CEU][hapmap]
rs6574037	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6574038	0.88[ASN][1000 genomes]
rs8008678	0.91[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8013467	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72475200-72475800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:72475600-72476000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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