Variant report

Variant	rs2216101
Chromosome Location	chr2:36640405-36640406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1523787	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2160367	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs2177434	0.94[CHB][hapmap]
rs2216099	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2840167	0.80[CEU][hapmap]
rs3770876	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes]
rs3770900	0.88[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs4670551	0.81[CEU][hapmap]
rs57947134	0.85[ASN][1000 genomes]
rs711253	1.00[CHB][hapmap]
rs7562348	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs7562790	0.83[CEU][hapmap]
rs888078	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:36618600-36643000	Genic enhancers	Osteobl	bone
3	chr2:36624800-36643600	Weak transcription	Colonic Mucosa	Colon
4	chr2:36625600-36643800	Weak transcription	Fetal Intestine Small	intestine
5	chr2:36625800-36642200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:36626000-36643800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:36630200-36641000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:36631600-36644600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:36632200-36648000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr2:36633400-36640600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:36635000-36640600	Enhancers	NHDF-Ad	bronchial
12	chr2:36635200-36641000	Enhancers	Fetal Heart	heart
13	chr2:36635600-36641800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr2:36635800-36641600	Weak transcription	Right Atrium	heart
15	chr2:36635800-36641800	Weak transcription	Placenta	Placenta
16	chr2:36635800-36643000	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:36635800-36643800	Weak transcription	Fetal Intestine Large	intestine
18	chr2:36635800-36644000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr2:36635800-36647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr2:36636000-36642600	Weak transcription	HMEC	breast
21	chr2:36636000-36647600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:36636000-36647600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr2:36636600-36640800	Genic enhancers	HSMM	muscle
24	chr2:36636800-36643600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr2:36636800-36647600	Weak transcription	Lung	lung
26	chr2:36636800-36656000	Weak transcription	Esophagus	oesophagus
27	chr2:36637200-36641400	Enhancers	Fetal Kidney	kidney
28	chr2:36637400-36640800	Weak transcription	Fetal Brain Male	brain
29	chr2:36637400-36641000	Weak transcription	Hela-S3	cervix
30	chr2:36637400-36641800	Weak transcription	Right Ventricle	heart
31	chr2:36637400-36642800	Enhancers	NHLF	lung
32	chr2:36638000-36642400	Enhancers	Brain Hippocampus Middle	brain
33	chr2:36638000-36644400	Strong transcription	NHEK	skin
34	chr2:36638000-36647800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr2:36638200-36641000	Weak transcription	Small Intestine	intestine
36	chr2:36638200-36641200	Weak transcription	Left Ventricle	heart
37	chr2:36638200-36647600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr2:36638400-36646400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr2:36638800-36641000	Enhancers	NH-A	brain
40	chr2:36639000-36640800	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr2:36639000-36641200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr2:36639000-36644600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr2:36639200-36641000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:36639200-36641400	Weak transcription	Colon Smooth Muscle	Colon
45	chr2:36639200-36642200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr2:36639200-36643800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr2:36639400-36640800	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr2:36639400-36642200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr2:36639400-36643000	Genic enhancers	Muscle Satellite Cultured Cells	--
50	chr2:36639400-36647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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