Variant report

Variant	rs2840167
Chromosome Location	chr2:36683316-36683317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36677912..36680893-chr2:36680931..36685254,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1017154	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs1523787	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2160367	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2216101	0.80[CEU][hapmap]
rs3770876	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3770900	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs7562790	0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs888078	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
2	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:36666400-36686800	Weak transcription	Gastric	stomach
4	chr2:36666600-36683400	Genic enhancers	NHLF	lung
5	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:36669200-36688200	Weak transcription	Thymus	Thymus
7	chr2:36669400-36688000	Weak transcription	Fetal Thymus	thymus
8	chr2:36669600-36683800	Weak transcription	Brain Germinal Matrix	brain
9	chr2:36670000-36688200	Weak transcription	Primary T cells from cord blood	blood
10	chr2:36672400-36683600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr2:36672800-36683400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:36672800-36688000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:36673600-36688000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:36675400-36683400	Genic enhancers	Muscle Satellite Cultured Cells	--
15	chr2:36675400-36688000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr2:36676600-36683400	Enhancers	Adipose Nuclei	Adipose
17	chr2:36676600-36685200	Enhancers	Fetal Heart	heart
18	chr2:36677600-36684800	Genic enhancers	HSMMtube	muscle
19	chr2:36677800-36683400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr2:36678000-36688000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:36678400-36688000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr2:36678800-36685600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:36679000-36684400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:36679000-36686200	Strong transcription	NHEK	skin
25	chr2:36679000-36687600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:36679200-36688400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:36679400-36683600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:36679800-36687200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:36679800-36704000	Weak transcription	Fetal Brain Female	brain
30	chr2:36680000-36683400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr2:36680200-36683400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr2:36680400-36683600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr2:36680400-36695600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr2:36681000-36686600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr2:36681200-36683400	Strong transcription	Primary B cells from cord blood	blood
36	chr2:36681200-36683600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:36681200-36683600	Enhancers	Ovary	ovary
38	chr2:36681200-36684000	Genic enhancers	Aorta	Aorta
39	chr2:36681200-36684200	Enhancers	Left Ventricle	heart
40	chr2:36681200-36684200	Enhancers	Psoas Muscle	Psoas
41	chr2:36681400-36684000	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr2:36681400-36684600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr2:36681600-36683400	Genic enhancers	Osteobl	bone
44	chr2:36681600-36685400	Weak transcription	Hela-S3	cervix
45	chr2:36681800-36683600	Enhancers	Fetal Muscle Leg	muscle
46	chr2:36682000-36683400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr2:36682000-36683800	Enhancers	Liver	Liver
48	chr2:36682000-36684000	Enhancers	Lung	lung
49	chr2:36682000-36684800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr2:36682000-36684800	Genic enhancers	Placenta	Placenta

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