Variant report

Variant	rs2217060
Chromosome Location	chr5:94338526-94338527
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10515220	0.87[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17084355	0.90[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs211514	0.84[ASN][1000 genomes]
rs2194944	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs295206	0.87[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs295208	1.00[ASW][hapmap];0.87[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs309806	0.86[ASN][1000 genomes]
rs309808	0.87[ASN][1000 genomes]
rs34112411	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34838199	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35270609	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs378228	0.85[TSI][hapmap]
rs381984	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs384495	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs433273	0.86[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs450767	0.83[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4869226	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62364694	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62364696	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62364697	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62364698	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62364699	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7732965	0.93[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94319800-94346600	Weak transcription	HUVEC	blood vessel
2	chr5:94320400-94348000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:94326000-94339400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:94327000-94339200	Weak transcription	Primary T cells from cord blood	blood
5	chr5:94327200-94339000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:94334600-94339000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:94334800-94353400	Weak transcription	Gastric	stomach
8	chr5:94334800-94358200	Weak transcription	Stomach Mucosa	stomach
9	chr5:94337400-94339200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:94337400-94343200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:94337600-94341400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr5:94337800-94346800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:94338200-94339600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:94338400-94339000	Weak transcription	Monocytes-CD14+_RO01746	blood

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