Variant report

Variant	rs62364697
Chromosome Location	chr5:94342534-94342535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10515220	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17084355	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs211514	0.85[ASN][1000 genomes]
rs2194944	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2217060	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs295206	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs295208	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs309806	0.86[ASN][1000 genomes]
rs309808	0.88[ASN][1000 genomes]
rs34112411	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34838199	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35270609	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs381984	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs384495	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs433273	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs450767	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4869226	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62364694	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62364696	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62364698	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62364699	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7732965	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94319800-94346600	Weak transcription	HUVEC	blood vessel
2	chr5:94320400-94348000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:94334800-94353400	Weak transcription	Gastric	stomach
4	chr5:94334800-94358200	Weak transcription	Stomach Mucosa	stomach
5	chr5:94337400-94343200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:94337800-94346800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:94339000-94343200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
8	chr5:94339000-94343400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr5:94339800-94349600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:94340800-94349400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:94340800-94352200	Weak transcription	Lung	lung
12	chr5:94340800-94362800	Weak transcription	Thymus	Thymus
13	chr5:94340800-94363000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:94341000-94349200	Weak transcription	Fetal Thymus	thymus
15	chr5:94341000-94349400	Weak transcription	Primary T cells from cord blood	blood
16	chr5:94341400-94342600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:94341400-94349200	Weak transcription	Brain Anterior Caudate	brain
18	chr5:94341600-94346600	Weak transcription	Left Ventricle	heart

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