Variant report

Variant	rs2217970
Chromosome Location	chr15:60090978-60090979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12914150	0.87[EUR][1000 genomes]
rs71407089	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60083000-60091600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:60085000-60095600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:60087200-60095400	Weak transcription	Fetal Thymus	thymus
4	chr15:60089200-60095600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr15:60089800-60097000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr15:60090000-60091200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:60090000-60091200	Enhancers	Thymus	Thymus
8	chr15:60090000-60091400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr15:60090000-60091600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr15:60090000-60095400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr15:60090200-60091000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr15:60090200-60091000	Enhancers	HMEC	breast
13	chr15:60090600-60091000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr15:60090600-60091000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr15:60090600-60091000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:60090800-60091000	Enhancers	Primary T cells from cord blood	blood
17	chr15:60090800-60091000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:60090800-60091000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:60090800-60091000	Enhancers	NHEK	skin
20	chr15:60090800-60091200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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