Variant report

Variant	rs12914150
Chromosome Location	chr15:60078693-60078694
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11630216	1.00[ASN][1000 genomes]
rs11633106	1.00[ASN][1000 genomes]
rs11635562	1.00[ASN][1000 genomes]
rs11639458	1.00[ASN][1000 genomes]
rs17269838	1.00[ASN][1000 genomes]
rs2114133	1.00[ASN][1000 genomes]
rs2217970	0.87[EUR][1000 genomes]
rs4496069	1.00[ASN][1000 genomes]
rs4601985	1.00[ASN][1000 genomes]
rs56105620	1.00[ASN][1000 genomes]
rs71407089	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71480544	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737686	1.00[ASN][1000 genomes]
rs8035797	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60076400-60080200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:60076800-60079600	Weak transcription	Fetal Thymus	thymus
3	chr15:60076800-60080200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr15:60076800-60080400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:60077000-60080000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:60077000-60080000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:60077000-60080200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr15:60077000-60080200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:60077000-60080200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr15:60077000-60080200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:60077000-60080200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:60077400-60080200	Weak transcription	Primary T cells from cord blood	blood
13	chr15:60077400-60080200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:60077600-60079600	Weak transcription	Thymus	Thymus
15	chr15:60077800-60079600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr15:60077800-60080000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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