Variant report

Variant	rs71480544
Chromosome Location	chr15:60054897-60054898
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11630216	1.00[ASN][1000 genomes]
rs11633106	1.00[ASN][1000 genomes]
rs11635562	1.00[ASN][1000 genomes]
rs11639458	1.00[ASN][1000 genomes]
rs12914150	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17269838	1.00[ASN][1000 genomes]
rs4496069	1.00[ASN][1000 genomes]
rs4601985	1.00[ASN][1000 genomes]
rs56105620	1.00[ASN][1000 genomes]
rs71407089	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737686	1.00[ASN][1000 genomes]
rs8035797	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60054800-60055400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr15:60054800-60055400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr15:60054800-60055400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:60054800-60055600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr15:60054800-60055600	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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