Variant report

Variant	rs11630216
Chromosome Location	chr15:60199596-60199597
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11633106	1.00[ASN][1000 genomes]
rs11635562	1.00[ASN][1000 genomes]
rs11639458	1.00[ASN][1000 genomes]
rs12914150	1.00[ASN][1000 genomes]
rs17269838	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2114133	1.00[ASN][1000 genomes]
rs4496069	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4601985	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56105620	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71407089	1.00[ASN][1000 genomes]
rs71480544	1.00[ASN][1000 genomes]
rs72737686	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035797	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60197000-60202000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:60197200-60209600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:60197800-60202000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:60198000-60202000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:60198600-60202000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:60198600-60202200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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