Variant report

Variant	rs11639458
Chromosome Location	chr15:60222344-60222345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11630216	1.00[ASN][1000 genomes]
rs11633106	1.00[ASN][1000 genomes]
rs11635562	1.00[ASN][1000 genomes]
rs12914150	1.00[ASN][1000 genomes]
rs17269838	1.00[ASN][1000 genomes]
rs2114133	1.00[ASN][1000 genomes]
rs4496069	1.00[ASN][1000 genomes]
rs4601985	1.00[ASN][1000 genomes]
rs55919918	0.89[EUR][1000 genomes]
rs56105620	1.00[ASN][1000 genomes]
rs59757738	0.93[EUR][1000 genomes]
rs71407089	1.00[ASN][1000 genomes]
rs71480544	1.00[ASN][1000 genomes]
rs72737686	1.00[ASN][1000 genomes]
rs8035797	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2760398	chr15:60208658-60243534	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1553	chr15:60209361-60234943	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11639458	T	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60211600-60223000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:60222200-60222400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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