Variant report

Variant	rs56105620
Chromosome Location	chr15:60177990-60177991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11630216	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633106	1.00[ASN][1000 genomes]
rs11635562	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639458	1.00[ASN][1000 genomes]
rs12914150	1.00[ASN][1000 genomes]
rs17269838	1.00[ASN][1000 genomes]
rs2114133	1.00[ASN][1000 genomes]
rs4496069	1.00[ASN][1000 genomes]
rs4601985	1.00[ASN][1000 genomes]
rs71407089	1.00[ASN][1000 genomes]
rs71480544	1.00[ASN][1000 genomes]
rs72737686	1.00[ASN][1000 genomes]
rs8035797	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60171000-60178200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr15:60172000-60178000	Weak transcription	Thymus	Thymus
3	chr15:60172800-60178200	Weak transcription	Fetal Brain Female	brain
4	chr15:60175800-60178000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:60176000-60178000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:60176000-60178200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:60176000-60178200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:60176000-60178800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:60176200-60178000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:60176200-60178000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:60177400-60178000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:60177400-60178000	Enhancers	HMEC	breast
13	chr15:60177400-60178000	Enhancers	NHEK	skin
14	chr15:60177400-60179000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:60177600-60179000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:60177800-60178000	Enhancers	Brain Hippocampus Middle	brain
17	chr15:60177800-60178000	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr15:60177800-60178800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr15:60177800-60179200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:60177800-60179400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr15:60177800-60179600	Enhancers	Brain Germinal Matrix	brain

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