Variant report

Variant	rs2218264
Chromosome Location	chr4:77158640-77158641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77157429..77161851-chr4:77161856..77166558,5	MCF-7	breast:
2	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
3	chr4:77131893..77139465-chr4:77152630..77158664,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138760	Chromatin interaction
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10446680	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11097296	0.88[ASN][1000 genomes]
rs11097297	0.88[ASN][1000 genomes]
rs11737624	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12331583	0.88[ASN][1000 genomes]
rs12501795	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348206	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1348208	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1372408	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441906	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1441907	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1441908	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1441917	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441918	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441919	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441921	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441922	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2197102	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28530675	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28718095	0.86[ASN][1000 genomes]
rs2904215	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2904216	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35177915	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35851125	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3919711	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859645	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4859647	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56371028	0.88[ASN][1000 genomes]
rs6814385	0.88[ASN][1000 genomes]
rs6837231	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6837841	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854218	0.88[ASN][1000 genomes]
rs6855568	0.87[ASN][1000 genomes]
rs7657929	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77154200-77159800	Enhancers	Stomach Mucosa	stomach
2	chr4:77155800-77158800	Weak transcription	Psoas Muscle	Psoas
3	chr4:77156000-77159000	Weak transcription	Pancreas	Pancrea
4	chr4:77156000-77160000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:77156000-77163400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:77156800-77158800	Weak transcription	Placenta	Placenta
7	chr4:77157000-77159400	Weak transcription	Colonic Mucosa	Colon
8	chr4:77157200-77159200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:77157800-77164400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:77158200-77159000	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr4:77158400-77159000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr4:77158600-77158800	Enhancers	Duodenum Mucosa	Duodenum
13	chr4:77158600-77158800	Enhancers	Skeletal Muscle Female	skeletal muscle

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