Variant report

Variant	rs3919711
Chromosome Location	chr4:77159039-77159040
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77157429..77161851-chr4:77161856..77166558,5	MCF-7	breast:
2	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138760	Chromatin interaction
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10446680	0.91[ASN][1000 genomes]
rs11097296	0.88[ASN][1000 genomes]
rs11097297	0.88[ASN][1000 genomes]
rs11737624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12331583	0.88[ASN][1000 genomes]
rs12501795	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348206	0.91[ASN][1000 genomes]
rs1348208	0.91[ASN][1000 genomes]
rs1372408	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441906	0.91[ASN][1000 genomes]
rs1441907	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1441908	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1441917	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441918	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441921	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441922	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2197102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218264	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28530675	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28718095	0.86[ASN][1000 genomes]
rs2904215	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2904216	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35177915	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35851125	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859645	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4859647	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56371028	0.88[ASN][1000 genomes]
rs6814385	0.88[ASN][1000 genomes]
rs6837231	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6837841	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854218	0.88[ASN][1000 genomes]
rs6855568	0.87[ASN][1000 genomes]
rs7657929	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77154200-77159800	Enhancers	Stomach Mucosa	stomach
2	chr4:77156000-77160000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:77156000-77163400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:77157000-77159400	Weak transcription	Colonic Mucosa	Colon
5	chr4:77157200-77159200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:77157800-77164400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:77158800-77159400	Enhancers	Brain Angular Gyrus	brain
8	chr4:77158800-77159400	Enhancers	Psoas Muscle	Psoas
9	chr4:77158800-77159400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr4:77159000-77159800	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links