Variant report

Variant	rs2218997
Chromosome Location	chr5:114265416-114265417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10055666	0.92[EUR][1000 genomes]
rs10067801	0.92[EUR][1000 genomes]
rs10070575	0.92[EUR][1000 genomes]
rs10071942	0.90[EUR][1000 genomes]
rs11949059	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12188633	0.84[EUR][1000 genomes]
rs1453013	1.00[EUR][1000 genomes]
rs2218998	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36103574	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4340907	0.90[EUR][1000 genomes]
rs4485917	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4485918	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4505941	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4513688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4518385	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4640781	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57074641	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58379915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59147559	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60580788	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61097458	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61389488	0.92[EUR][1000 genomes]
rs6594841	0.90[EUR][1000 genomes]
rs6594842	0.90[EUR][1000 genomes]
rs6594843	0.88[EUR][1000 genomes]
rs6594844	0.82[EUR][1000 genomes]
rs6594848	0.90[EUR][1000 genomes]
rs6859066	0.90[EUR][1000 genomes]
rs6863152	0.90[EUR][1000 genomes]
rs6867771	1.00[EUR][1000 genomes]
rs6876195	0.90[EUR][1000 genomes]
rs6877494	0.90[EUR][1000 genomes]
rs6881596	0.90[EUR][1000 genomes]
rs6882425	0.88[EUR][1000 genomes]
rs6884508	0.92[EUR][1000 genomes]
rs6885177	0.92[EUR][1000 genomes]
rs6885466	0.90[EUR][1000 genomes]
rs6885627	0.90[EUR][1000 genomes]
rs6889672	0.92[EUR][1000 genomes]
rs6889860	0.92[EUR][1000 genomes]
rs6890974	0.92[EUR][1000 genomes]
rs6891679	0.94[EUR][1000 genomes]
rs6893595	0.90[EUR][1000 genomes]
rs6894130	0.90[EUR][1000 genomes]
rs6897194	0.88[EUR][1000 genomes]
rs6898043	1.00[EUR][1000 genomes]
rs73243903	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73243944	0.98[EUR][1000 genomes]
rs73243957	1.00[EUR][1000 genomes]
rs73243963	1.00[EUR][1000 genomes]
rs73245620	0.84[EUR][1000 genomes]
rs73245623	0.84[EUR][1000 genomes]
rs73257596	0.88[EUR][1000 genomes]
rs73259504	0.88[EUR][1000 genomes]
rs73259509	0.92[EUR][1000 genomes]
rs73259517	0.92[EUR][1000 genomes]
rs7700555	0.90[EUR][1000 genomes]
rs7703133	0.92[EUR][1000 genomes]
rs7706171	0.90[EUR][1000 genomes]
rs7706222	0.90[EUR][1000 genomes]
rs7710516	0.90[EUR][1000 genomes]
rs7730893	0.88[EUR][1000 genomes]
rs7731393	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv4963	chr5:114234431-114288397	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv511293	chr5:114248387-114279914	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv1808445	chr5:114255927-114327073	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1792310	chr5:114256573-114279914	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv1800292	chr5:114256573-114279914	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv1801111	chr5:114256573-114279914	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	esv1805573	chr5:114256573-114283042	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv1806485	chr5:114256573-114283042	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	esv1811549	chr5:114256573-114283042	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3419279	chr5:114263753-114266151	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114265200-114266800	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links