Variant report

Variant	rs6594841
Chromosome Location	chr5:114175022-114175023
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10055666	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10061431	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10067801	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10069405	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10070575	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10071942	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10074674	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11949059	0.90[EUR][1000 genomes]
rs1453013	0.90[EUR][1000 genomes]
rs17366272	0.98[EUR][1000 genomes]
rs1993925	0.96[EUR][1000 genomes]
rs2086262	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2086263	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2086264	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2218997	0.90[EUR][1000 genomes]
rs2218998	0.90[EUR][1000 genomes]
rs28755443	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34758632	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs36103574	0.90[EUR][1000 genomes]
rs4257758	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4340907	1.00[EUR][1000 genomes]
rs4485917	0.90[EUR][1000 genomes]
rs4485918	0.90[EUR][1000 genomes]
rs4505941	0.86[EUR][1000 genomes]
rs4513688	0.90[EUR][1000 genomes]
rs4518385	0.90[EUR][1000 genomes]
rs4640781	0.90[EUR][1000 genomes]
rs57074641	0.90[EUR][1000 genomes]
rs57315626	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58379915	0.90[EUR][1000 genomes]
rs59147559	0.90[EUR][1000 genomes]
rs60580788	0.90[EUR][1000 genomes]
rs61097458	0.90[EUR][1000 genomes]
rs61389488	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6594842	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6594843	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6594844	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6594848	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6859066	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6863152	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867771	0.90[EUR][1000 genomes]
rs6876195	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6876229	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6877494	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6881596	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6882425	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6882601	0.83[AMR][1000 genomes]
rs6884508	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6885177	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6885466	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6885627	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6889672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6889860	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6890974	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6891679	0.84[EUR][1000 genomes]
rs6893595	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6894130	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6895899	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6897194	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6898043	0.90[EUR][1000 genomes]
rs73243903	0.90[EUR][1000 genomes]
rs73243944	0.88[EUR][1000 genomes]
rs73243957	0.90[EUR][1000 genomes]
rs73243963	0.90[EUR][1000 genomes]
rs73257550	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73257557	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73257562	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73257596	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73259504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73259509	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73259517	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7700555	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7703133	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7706010	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7706171	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7706222	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7710516	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7711594	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7730893	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7731393	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1018819	chr5:114036386-114175065	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1032132	chr5:114041518-114175142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv981027	chr5:114143849-114191806	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114175000-114175400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:114175000-114175400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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