Variant report

Variant	rs10074674
Chromosome Location	chr5:114165953-114165954
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10055666	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10061431	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10067801	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10069405	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10070575	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10071942	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10519398	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12110183	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17673184	0.91[EUR][1000 genomes]
rs2086262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2086263	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2086264	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28755443	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34758632	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4257758	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4449521	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6594841	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6594842	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6594843	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6594844	0.83[AFR][1000 genomes]
rs6594848	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6859066	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6863152	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6876195	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6877494	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6882425	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6884508	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6885177	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6885466	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6885627	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6889672	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6889860	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6890974	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6894130	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6895899	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6897194	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73257550	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73257557	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73257562	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73259504	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73259509	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7700555	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7703133	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7706222	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7730893	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs899481	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv599435	chr5:113957246-114166068	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1018819	chr5:114036386-114175065	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv599446	chr5:114041080-114166068	Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1032132	chr5:114041518-114175142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv981027	chr5:114143849-114191806	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114165600-114166000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:114165600-114166000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:114165600-114166000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links