Variant report

Variant	rs899481
Chromosome Location	chr5:114168260-114168261
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10061431	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10069405	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10074674	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519398	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12110183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17673184	0.91[EUR][1000 genomes]
rs2086262	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2086263	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2086264	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28755443	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34758632	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4257758	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4449521	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57315626	0.85[AFR][1000 genomes]
rs61389488	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6881596	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6893595	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6895899	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73257550	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73257557	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73257562	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73257596	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73259517	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7706010	0.82[AFR][1000 genomes]
rs7706171	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7710516	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7731393	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1018819	chr5:114036386-114175065	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1032132	chr5:114041518-114175142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv981027	chr5:114143849-114191806	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114166000-114175000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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