Variant report

Variant	rs2219897
Chromosome Location	chr14:85558482-85558483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10130252	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11626130	1.00[CHB][hapmap]
rs1351386	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1480417	1.00[EUR][1000 genomes]
rs1480418	1.00[EUR][1000 genomes]
rs1480419	1.00[EUR][1000 genomes]
rs1480420	1.00[EUR][1000 genomes]
rs1628782	1.00[EUR][1000 genomes]
rs1679635	1.00[EUR][1000 genomes]
rs1679637	1.00[EUR][1000 genomes]
rs17201769	1.00[CHB][hapmap]
rs1756582	1.00[EUR][1000 genomes]
rs17796627	1.00[CHB][hapmap]
rs1987905	0.98[AFR][1000 genomes]
rs709861	1.00[EUR][1000 genomes]
rs709862	1.00[EUR][1000 genomes]
rs709863	1.00[EUR][1000 genomes]
rs709877	1.00[EUR][1000 genomes]
rs7153684	1.00[EUR][1000 genomes]
rs7154069	1.00[EUR][1000 genomes]
rs8004969	1.00[EUR][1000 genomes]
rs856633	1.00[EUR][1000 genomes]
rs856634	1.00[EUR][1000 genomes]
rs856637	1.00[EUR][1000 genomes]
rs856702	1.00[EUR][1000 genomes]
rs899761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs991701	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048026	chr14:85330544-85686322	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv565423	chr14:85427846-85638746	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv983979	chr14:85542796-85613582	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85555200-85559400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr14:85555400-85559200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:85555400-85559400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:85557400-85559400	Weak transcription	Osteobl	bone
5	chr14:85557600-85559200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:85558000-85559600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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