Variant report
| Variant | rs8004969 |
|---|---|
| Chromosome Location | chr14:85398885-85398886 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10130252 | 1.00[EUR][1000 genomes] |
| rs10133947 | 1.00[EUR][1000 genomes] |
| rs1351386 | 1.00[EUR][1000 genomes] |
| rs1480417 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1480418 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1480419 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1480420 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1628782 | 1.00[EUR][1000 genomes] |
| rs1679635 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1679637 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1756568 | 1.00[EUR][1000 genomes] |
| rs1756582 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2219897 | 1.00[EUR][1000 genomes] |
| rs709861 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs709862 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs709863 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs709877 | 1.00[EUR][1000 genomes] |
| rs7153684 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7154069 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs856633 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs856634 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs856637 | 1.00[EUR][1000 genomes] |
| rs856668 | 1.00[EUR][1000 genomes] |
| rs856702 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs899761 | 1.00[EUR][1000 genomes] |
| rs991701 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751288 | chr14:84815330-85704047 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1048026 | chr14:85330544-85686322 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv3401331 | chr14:85332747-85716351 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:85398600-85399800 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
