Variant report

Variant	rs2220257
Chromosome Location	chr2:141604697-141604698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10170094	0.87[LWK][hapmap];0.80[MKK][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs10204756	0.84[JPT][hapmap]
rs1157026	0.86[JPT][hapmap]
rs11901880	0.94[CHB][hapmap];0.84[CHD][hapmap]
rs12467730	0.94[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs12474883	0.86[JPT][hapmap]
rs12691577	0.86[JPT][hapmap]
rs12691578	0.86[JPT][hapmap]
rs13416050	0.83[ASN][1000 genomes]
rs1429352	0.86[JPT][hapmap]
rs1429359	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs1864278	0.85[ASW][hapmap];0.83[CHB][hapmap];0.82[TSI][hapmap]
rs1864279	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs2087024	0.81[JPT][hapmap]
rs4954676	1.00[ASW][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.85[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs996598	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141604000-141604800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:141604200-141604800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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